[1]. X-ray structure of the direct electron transfer-type FAD glucose dehydrogenase catalytic subunit complexed with a hitchhiker protein
Acta Crystallogr D Struct Biol 75/9 841-851 (2019) [Refereed] refereed [Internationally co-authored papers] internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Yoshida Hiromi [共著者]Ferri Stefano [Notes] Was involved in the design, supervision, and data analysis of the research; and contributed to the writing of the paper.
[URL] [DOI]
[2]. Glycogen Production in Marine Cyanobacterial Strain Synechococcus sp. NKBG 15041c
Marine Biotechnology 20/2 109-117 (2018) [Refereed] refereed [Internationally co-authored papers] internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Badary Amr [共著者]Ferri Stefano [Notes] Was involved in the design, supervision, and data analysis of the research; and contributed to the writing of the paper.
[DOI]
[3]. An Fe-S cluster in the conserved Cys-rich region in the catalytic subunit of FAD-dependent dehydrogenase complexes
Bioelectrochemistry 112/ 178-183 (2016) [Refereed] refereed [Internationally co-authored papers] internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Shiota Masaki [共著者]Ferri Stefano [URL]
[4]. Construction of a Miniaturized Chromatic Acclimation Sensor from Cyanobacteria with Reversed Response to a Light Signal
Scientific Reports 6/ 37595- (2016) [Refereed] refereed [Internationally co-authored papers] internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Nakajima Mitsuharu [共著者]Ferri Stefano [URL]
[5]. Electrochemical sensing system employing fructosamine 6-kinase enables glycated albumin measurement requiring no proteolytic digestion
Biotechnology Journal 11/6 797-804 (2016) [Refereed] refereed [Internationally co-authored papers] internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Kameya Miho [共著者]Ferri Stefano [DOI]
[6]. Development of a light-regulated cell-recovery system for non-photosynthetic bacteria
Microbial Cell Factories 15/1 31- (2016) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Ferri Stefano
[7]. Efficient surface-display of autotransporter proteins in cyanobacteria
Algal Research 12/ 337-340 (2015) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] Ferri Stefano
[8]. Improvement of the VEGF binding ability of DNA aptamers through in silico maturation and multimerization strategy Journal of Biotechnology
J Biotechnol 212/ 99-105 (2015) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Ferri Stefano
[9]. Scaffold-fused riboregulators for enhanced gene activation in Synechocystis sp. PCC 6803
Microbiologyopen 4/4 533-540 (2015) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Ferri Stefano
[10]. The development and characterization of an exogenous green-light-regulated gene expression system in marine cyanobacteria
Mar Biotechnol (NY) 17/3 245-251 (2015) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Ferri Stefano
[11]. Advancing the Development of Glycated Protein Biosensing Technology: Next-Generation Sensing Molecules
The Journal of Diabetes Science and Technology 9/2 183-191 (2015) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Ferri Stefano
[12]. Selection of DNA aptamers against uropathogenic Escherichia coli NSM59 by quantitative PCR controlled Cell-SELEX
J Microbiol Methods 104/ 94-100 (2014) [Refereed] refereed [Internationally co-authored papers] internationally co-authored paper
[Lead author or co-author] co-author
[Author] Savory N, Nzakizwanayo J, Abe K, Yoshida W, Ferri S, Dedi C, Jones BV, Ikebukuro K [URL] [DOI]
[13]. A green-light inducible lytic system for cyanobacterial cells. Biotechnol Biofuels
Biotechnol Biofuels 7/1 - 56 (2014) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Miyake K, Abe K, Ferri S, Nakajima M, Nakamura M, Yoshida W, Kojima K, Ikebukuro K, Sode K [URL] [DOI]
[14]. Engineering glucose oxidase to minimize the influence of oxygen on sensor response
Electrochimica Acta 126/ 158-161 (2014) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Horaguchi Y, Saito S, Kojima K, Tsugawa W, Ferri S, Sode K [URL] [DOI]
[15]. Improving the Gene-Regulation Ability of Small RNAs by Scaffold Engineering in Escherichia coli
ACS Synth Biol 3/3 152-162 (2014) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Sakai Y, Abe K, Nakashima S, Yoshida W, Ferri S, Sode K, Ikebukuro K [URL] [DOI]
[16]. Simultaneous improvement of specificity and affinity of aptamers against Streptococcus mutans by in silico maturation for biosensor development
Biotechnol Bioeng 111/3 454-461 (2014) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Savory N, Takahashi Y, Tsukakoshi K, Hasegawa H, Takase M, Abe K, Yoshida W, Ferri S, Kumazawa S, Sode K, Ikebukuro K [URL] [DOI]
[17]. Engineering of a green-light inducible gene expression system in Synechocystis sp. PCC6803
Microb Biotechnol 7/2 177-183 (2014) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Abe K, Miyake K, Nakamura M, Kojima K, Ferri S, Ikebukuro K, Sode K [URL] [DOI]
[18]. Screening of peptide ligands for pyrroloquinoline quinone glucose dehydrogenase using antagonistic template-based biopanning
Int J Mol Sci 14/12 23244-23256 (2013) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Abe K, Yoshida W, Terada K, Yagi-Ishii Y, Ferri S, Ikebukuro K, Sode K [URL] [DOI]
[19]. Two-Dimensional Electrophoresis-Based Selection of Aptamers against an Unidentified Protein in a Tissue Sample
Anal Lett 46/18 2954-2963 (2013) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Savory N, Goto S, Yoshida W, Unuma Y, Nakamura M, Abe K, Ferri S, Ikebukuro K [URL] [DOI]
[20]. In silico maturation of binding-specificity of DNA aptamers against Proteus mirabilis
Biotechnol Bioeng 110/10 2573-2580 (2013) [Refereed] refereed [Internationally co-authored papers] internationally co-authored paper
[Lead author or co-author] co-author
[Author] Savory N, Lednor D, Tsukakoshi K, Abe K, Yoshida W, Ferri S, Jones BV, Ikebukuro K [URL] [DOI]
[21]. Engineering fructosyl peptide oxidase to improve activity toward the fructosyl hexapeptide standard for HbA1c measurement
Mol Biotechnol 54/3 939-943 (2013) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] Ferri S, Miyamoto Y, Sakaguchi-Mikami A, Tsugawa W, Sode K [URL] [DOI]
[22]. Aptamer selection based on g4-forming promoter region
PLoS One 8/6 - e65497 (2013) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Yoshida W, Saito T, Yokoyama T, Ferri S, Ikebukuro K [URL] [DOI]
[23]. Cloning and characterization of fructosamine-6-kinase from Arthrobacter aurescens
Appl Biochem Biotechnol 170/3 710-717 (2013) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Sakaguchi-Mikami A, Kameya M, Ferri S, Tsugawa W, Sode K [URL] [DOI]
[24]. Identification and functional analysis of fructosyl amino acid-binding protein from Gram-positive bacterium Arthrobacter sp
J Appl Microbiol 114/5 1449-1456 (2013) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Sakaguchi-Mikami A, Ferri S, Katayama S, Tsugawa W, Sode K [URL] [DOI]
[25]. Mutational analysis of the oxygen-binding site of cholesterol oxidase and its impact on dye-mediated dehydrogenase activity
J Mol Catal B: Enzym. 88/ 41-46 (2013) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Kojima K, Kobayashi T, Tsugawa W, Ferri S, Sode K [URL] [DOI]
[26]. Substrate specificity engineering of Escherichia coli derived fructosamine 6-kinase
Biotechnol. Lett. 35/2 1062-1069 (2013) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Kojima K, Mikami-Sakaguchi A, Kameya M, Miyamoto Y, Ferri S, Tsugawa W, Sode K [URL] [DOI]
[27]. Direct electron transfer type disposable sensor strip for glucose sensing employing an engineered FAD glucose dehydrogenase
Enzyme Microb Technol 52/2 123-128 (2013) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Yamashita Y, Ferri S, Huynh ML, Shimizu H, Yamaoka H, Sode K [URL] [DOI]
[28]. Affinity improvement of a VEGF aptamer by in silico maturation for a sensitive VEGF-detection system.
Anal Chem 85/2 1132-1137 (2013) [Refereed] refereed [Internationally co-authored papers] internationally co-authored paper
[Lead author or co-author] co-author
[Author] Nonaka Y, Yoshida W, Abe K, Ferri S, Schulze H, Bachmann TT, Ikebukuro K [URL] [DOI]
[29]. Construction of mutant glucose oxidases with increased dye-mediated dehydrogenase activity.
Int J Mol Sci 13/11 14149-14157 (2012) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Horaguchi Y, Saito S, Kojima K, Tsugawa W, Ferri S, Sode K [URL] [DOI]
[30]. Biomolecular engineering of biosensing molecules - The challenges in creating sensing molecules for glycated protein biosensing
Electrochemistry 80/5 293-298 (2012) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
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[Author] Ferri S, Sode K [URL] [DOI]
[31]. Construction of engineered fructosyl peptidyl oxidase for enzyme sensor applications under normal atmospheric conditions
Biotechnol. Lett. 34/3 491-497 (2012) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
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[Author] Kim S, Nibe E, Tsugawa W, Kojima K, Ferri S, Sode K [URL] [DOI]
[32]. Screening of Aspergillus-derived FAD glucose dehydrogenases from fungal genome database.
Biotechnol. Lett. 33/11 2255-2263 (2011) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
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[Author] Mori K, Nakajima M, Kojima K, Murakami K, Ferri S, Sode K [URL] [DOI]
[33]. Review of Glucose Oxidases and Glucose Dehydrogenases: A Bird’s Eye View of Glucose Sensing Enzymes
J Diabetes Sci Technol 5/5 1068-1076 (2011) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
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[Author] Ferri S, Kojima K, Sode K [URL] [DOI]
[34]. Tuning Fructosyl Peptidyl Oxidase into Dehydrogenase and Its Application for the Construction of an Enzyme Electrode.
ECS Transactions 35/7 113-116 (2011) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] Ferri S, Nibe E, Miyamoto Y, Kim S, Tsugawa W, Sode K
[35]. Engineering of dye-mediated dehydrogenase property of fructosyl amino acid oxidases by site-directed mutagenesis studies of its putative proton relay system.
Biotechnol. Lett. 32/8 1123-1129 (2010) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
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[Author] Kim S, Nibe E, Ferri S, Tsugawa W, Sode K [URL] [DOI]
[36]. Functional expression of Phanerochaete chrysosporium cellobiose dehydrogenase flavin domain in Escherichia coli.
Biotechnol. Lett. 32/6 855-859 (2010) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
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[Author] Desriani, Ferri S, Sode K [URL] [DOI]
[37]. Motif-based search for a novel fructosyl peptide oxidase from genome databases.
Biotechnol Bioeng. 106/3 358-366 (2010) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Kim S, Ferri S, Tsugawa W, Mori K, Sode K [URL] [DOI]
[38]. Amino acid substitution at the substrate-binding subsite alters the specificity of the Phanerochaete chrysosporium cellobiose dehydrogenase.
Biochem. Biophys. Res. Com. 391/2 1246-1250 (2010) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Desriani, Ferri S, Sode K [URL] [DOI]
[39]. Review of Fructosyl Amino Acid Oxidase Engineering Research: A Glimpse into the Future of Hemoglobin A1c Biosensing.
J Diabetes Sci Technol 3/3 585-592 (2009) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] Ferri S, Kim S, Tsugawa W, Sode K [URL] [DOI]
[40]. BioCapacitor - a novel category of biosensor.
Biosens Bioelectron 24/7 1837-1842 (2009) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Hanashi T, Yamazaki T, Tsugawa W, Ferri S, Nakayama D, Tomiyama M, Ikebukuro K, Sode K [URL] [DOI]
[41]. Cumulative effect of amino acid substitution at the putative active site of fructosyl amine oxidase. Enzyme and Microbial Technology
Enzyme and Microbial Technology 44/1 52-56 (2009) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
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[Author] Kim S, Miura S, Ferri S, Tsugawa W, Sode K [URL] [DOI]
[42]. Site directed mutagenesis studies of FAD-dependent glucose dehydrogenase catalytic subunit of Burkholderia cepacia. Biotechnol Lett.
Biotechnol. Lett. 30/11 1967-1972 (2008) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
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[43]. Engineering of Ligand Specificity of Periplasmic Binding Protein for Glucose Sensing.
Biotechnol. Lett. 30/8 1453-1460 (2008) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
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[44]. Development of fructosyl amine oxidase specific to fructosyl valine by site-directed mutagenesis.
Protein Eng Des Sel 21/ 233-239 (2008) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
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[Author] Miura S, Ferri S, Tsugawa W, Kim S, Sode K [URL] [DOI]
[45]. Branched-chain Amino Acid Biosensing Using Fluorescent Modified Engineered Leucine/Isoleucine/Valine Binding Protein.
Int J Mol Sci. 8/6 513-525 (2007) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
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[46]. Novel fluorescent nanosensor for alpha-fructosyl amino acids based on engineered fructosyl amino acid binding protein.
Biosens Bioelectron 20/9-10 1933-1938 (2007) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
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[47]. Active site analysis of fructosyl amine oxidase using homology modeling and site-directed mutagenesis.
Biotechnol. Lett. 28/23 1895-1900 (2006) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
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[48]. Cloning and functional expression of glucose dehydrogenase complex of Burkholderia cepacia in Escherichia coli.
J. Biotechnol. 123/2 127-136 (2006) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
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[49]. SocA is a novel periplasmic binding protein for fructosyl amino acid.
Biochem. Biophys. Res. Com. 336/4 1074-1080 (2005) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
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[50]. Increasing stability of water-soluble PQQ glucose dehydrogenase by increasing hydrophobic interaction at dimeric interface.
BMC Biochemistry 6/ - 1 (2005) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
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[51]. Isolation and Characterization of a Fructosyl-amine Oxidase from Arthrobacter Sp FV1-1.
Biotechnol. Lett. 27/1 27-32 (2005) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
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[52]. Cloning and Expression of a Fructosyl-amine Oxidase from the Marine Yeast Pichia Sp N1-1.
Mar Biotechnol (NY) 6/6 625-632 (2004) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
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[53]. Essential role of the small subunit of thermostable glucose dehydrogenase from Burkholderia cepacia.
Biotechnol. Lett. 26/22 1757-1761 (2004) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
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[54]. Substrate recognition and selectivity of plant glycerol-3-phosphate acyltransferases (GPATs) from Cucurbita moscata and Spinacea oleracea.
Acta Crystallogr D Biol Crystallogr 60/１ 13-21 (2004) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
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[55]. Development of a highly sensitive fructosyl-valine enzyme sensor employing recombinant fructosyl amine oxidase.
Electrochemistry 76/6 442-445 (2003) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
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[56]. Development of a flow injection analysis (FIA) enzyme sensor for fructosyl amine monitoring.
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Physiology, Biochemistry and Molecular Biology of Plant Lipids / 137-139 (1997) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
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[59]. Substrate Specificity Modification of the Stromal Glycerol-3-phosphate Acyltransferase.
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