静岡大学

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Researcher DataBase - Personal Information : SHINTANI Masaki

Papers, etc.

【Papers, etc.】
[1]. Incompatibility groups of Pseudomonas plasmids revisited: comprehensive analysis of R factors and their replicon BioRxiv / - 7660435 (2024) [Refereed] non-refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] author [Author] Yosuke Nishimura, Kensei Kaneko, Tatsuya Kamijo, Nanako Isogai, Maho Tokuda, Hui Xie, Yusuke Tsuda, Aki Hirabayashi, Ryota Moriuchi, Hideo Dohra, Kazuhide Kimbara, Chiho Suzuki-Minakuchi, Hideaki Nojiri, Haruo Suzuki, Masato Suzuki, Masaki Shintan [DOI] [2]. Harnessing a T1 Phage-Derived Spanin for Developing Phage-Based Antimicrobial Development BioDesign Research 6/0028 - (2024) [Refereed] non-refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] Yamashita W, Ojima S, Tamura A, Azam AH, Kondo K, Yuancheng Z, Cui L, Shintani M, Suzuki M, Takahashi Y, Watashi K, Tsuneda S, Kiga K. [DOI] [3]. Chromosome-scale genome assembly of an acidophilic microalga Tetratostichococcus sp. P1 isolated from a tropical peatland in Malaysia Microbiology Resource Announcements in press/ - (2024) [Refereed] refereed [Internationally co-authored papers] internationally co-authored paper [Lead author or co-author] co-author [Author] Maeda Y, Hirakawa T, Suzuki S, Suhaimi N, Syahirah N, Anuar S, Yoneda K, Shintani M, Suzuki K, Sunagawa N, Kawachi M, Suzuki I, Hara H [DOI] [4]. Microbial evolution through horizontal gene transfer by mobile genetic elements Microbial Biotechnology in press/ - (2024) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] author [Author] Maho Tokuda, Masaki Shintani [DOI] [5]. Identification of genes involved in enhanced membrane vesicle formation in Pseudomonas aeruginosa biofilms: Surface sensing facilitates vesiculation Frontiers in Microbiology 14/ - 1252155. (2023) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] Kanno M, Shiota T, Ueno S, Takahara M, Haneda K, Tahara YO, Shintani M, Nakao R, Miyata M, Kimbara K, Futamata H, Tashiro Y [DOI] [6]. Integrons, transposons and IS elements promote diversification of multidrug resistance plasmids and adaptation of their hosts to antibiotic pollutants from pharmaceutical companies Environmental Microbiology in press/ - (2023) [Refereed] refereed [Internationally co-authored papers] internationally co-authored paper [Lead author or co-author] co-author [Author] Shintani M, Vestergaard G, Milaković M, Kublik S, Smalla K, Schloter M, Udiković-Kolić N [DOI] [7]. Transconjugant range of PromA plasmids in microbial communities is predicted by sequence similarity with the bacterial host chromosome Microbial Genomics 9/6 - mgen001043 (2023) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] author [Author] Tokuda M, Yuki M, Ohkuma M, Kimbara K, Suzuki H, Shintani M. [DOI] [8]. Isolation and Genomic Analysis of 3-Chlorobenzoate-Degrading Bacteria from Soil Microorganisms 11/7 - 1684 (2023) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] author [Author] Ara I, Moriuchi R, Dohra H, Kimbara K, Ogawa N, Shintani M. [DOI] [9]. Reconsideration of the previously classified incompatibility groups of plasmids, IncP-1 and IncP-11 Environmental Microbiology in press/ - (2023) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] author [Author] Shintani M, Suzuki H, Nojiri H, Suzuki M. [DOI] [10]. Plasmids harboring a tandem duplicate of blaVIM-24 in carbapenem-resistant ST1816 Pseudomonas aeruginosa in Japan Microbial Drug Resistance in press/ - doi: 10.1089/mdr.2022.0168 (2022) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] Tomomi Hishinuma, Tatsuya Tada, Mari Tohya, Masaki Shintani, Masato Suzuki, Masahiro Shimojima, Teruo Kirikae [DOI] [11]. Complete genome sequence of Rhodococcus qingshengii N9T-4. Microbiology Resource Announcements 8/ - e0089122 (2022) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] author [Author] Obi N, Moriuchi R, Dohra H, Kimbara K, Shintani M, Yoshida N. [DOI] [12]. Hitherto-unnoticed self-transmissible plasmids widely distributed among different environments in Japan Applied and Environmental Microbiology 88/ - e0111422 (2022) [Refereed] non-refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] author [Author] Masaya Hayakawa, Maho Tokuda, Kensei Kaneko, Koichiro Nakamichi, Yukie Yamamoto, Tatsuya Kamijo, Honoka Umeki, Reimi Chiba, Ryo Yamada, Mitsuya Mori, Kosuke Yanagiya, Ryota Moriuchi, Masahiro Yuki, Hideo Dohra, Hiroyuki Futamata, Moriya Ohkuma, Kazuhide Kimbara, Masaki Shintani [DOI] [13]. Oligotrophic gene expression in Rhodococcus erythropolis N9T-4 under various nutrient conditions Microorganisms 10/9 - 1725 (2022) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] Yuri Ikeda, Mana Kishimoto, Masaki Shintani, Nobuyuki Yoshida [DOI] [14]. Precise classification of antimicrobial resistance-associated IncP-2 megaplasmids for molecular epidemiological studies on Pseudomonas species Journal of Antimicrobial Chemotherapy in press/ - (2022) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] author [Author] Shintani M, Suzuki H, Nojiri H, Suzuki M. [URL] [DOI] [15]. Incorporation of plasmid DNA in to bacterial membrane vesicles by peptidoglycan defects in Escherichia coli Frontiers in Microbiology 12/ - 747606 (2021) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] Aktar S, Okamoto Y, Ueno S, Tahara YO, Imaizumi M, Shintani M, Miyata M, Futamata H, Nojiri H, Tashiro Y. [DOI] [16]. Fluviispira sanaruensis sp., nov., isolated from a brackish lake in Hamamatsu, Japan Current Microbiology 78/8 3268-3276 (2021) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] author [Author] Maejima Y, Iino T, Moriuchi R, Muraguchi Y, Fukuda K, Nojiri H, Ohkuma M, Dohra H, Kimbara K, Shintani M [URL] [DOI] [17]. Effects of environmental factors and coexisting substrates on PAH degradation and transcriptomic responses of the defined bacterial consortium OPK. Environmental Pollution 277/ 116769- (2021) [Refereed] refereed [Internationally co-authored papers] internationally co-authored paper [Lead author or co-author] co-author [Author] Laothamteep N, Kawano H, Vejarano F, Suzuki-Minakuchi C, Shintani M, Nojiri H, Pinyakong O. [DOI] [18]. Oxygen concentration affects frequency and range of transconjugants for the incompatibility (Inc) P-1 and P-7 plasmids pBP136 and pCAR1. Bioscience, Biotechnology, Biochemistry 85/4 1005-1015 (2020) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] author [Author] Ochi K, Tokuda M, Yanagiya K, Suzuki-Minakuchi C, Nojiri H, Yuki M, Ohkuma M, Kimbara K, Shintani M. [URL] [DOI] [19]. Plant species-dependent increased abundance and diversity of IncP-1 plasmids in the rhizosphere -new insights into their role and ecology Frontiers in Microbiology 11/ 590776- (2020) [Refereed] refereed [Internationally co-authored papers] internationally co-authored paper [Lead author or co-author] co-author [Author] Shintani M, Nour E, Elsayed T, Blau K, Wall I, Jechalke S, Spröer C, Bunk B, Overmann J, Smalla K [URL] [DOI] [20]. Multilamellar and multivesicular outer membrane vesicles produced by a Buttiauxella agrestis tolB mutant. Applied and Environmental Microbiology / - (2020) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] KotaroTakaki, Yuhei Tahara, Nao Nakamichi, Yusuke Hasegawa, Masaki Shintani, Moriya Ohkuma, Makoto Miyata, Hiroyuki Futamata, Yosuke Tashiro [DOI] [21]. Light-response of Pseudomonas putida KT2440 mediated by class II LitR, a photosensor homolog. Journal of Bacteriology / - (2020) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] Satoru Sumi, Naotaka Mutaguchi, Teppei Ebuchi, Hiroaki Tsuchida, Takahiro Yamamoto, Maki Suzuki, Chihiro Natsuka, Hatsumi Shiratori-Takano, Masaki Shintani, Hideaki Nojiri, Kenji Ueda, Hideaki Takano [DOI] [22]. Determination of plasmid pSN1216-29 host range and the similarity in oligonucleotide composition between plasmid and host chromosomes. Frontiers in Microbiology 11/ 1187- (2020) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] author [Author] Maho Tokuda, Haruo Suzuki, Kosuke Yanagiya, Masahiro Yuki, Kengo Inoue, Moriya Ohkuma, Kazuhide Kimbara, Masaki Shintani [URL] [DOI] [23]. Chryseotalea sanaruensis gen. nov., sp., nov., a Member of the Family Cytophagaceae, Isolated from a Brackish Lake in Hamamatsu Japan. Current Microbiology 77/2 306-312 (2020) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] author [Author] Maejima Y, Iino T, Muraguchi Y, Fukuda K, Ohkuma M, Suzuki T, Moriuchi R, Dohra H, Kimbara K, Shintani M. [DOI] [24]. A rotational slurry bioreactor accelerates biodegradation of A-fuel in oil-contaminated soil even under low temperature conditions. Microorganisms 8/2 E291- (2020) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] author [Author] Miyoshi Y, Okada J, Urata T, Shintani M, Kimbara K. [URL] [DOI] [25]. Isolation and Characterization of Genes Responsible for Naphthalene Degradation from Thermophilic Naphthalene Degrader, Geobacillus sp. JF8. Microorganisms 8/1 E44- (2019) [Refereed] refereed [Internationally co-authored papers] internationally co-authored paper [Lead author or co-author] author [Author] Miyazawa D, Thanh LTH, Tani A, Shintani M, Loc NH, Hatta T, Kimbara K. [URL] [DOI] [26]. Identification of a transcriptional regulator for oligotrophy-responsive promoter in Rhodococcus erythropolis N9T-4. Bioscience, Biotechnology, and Biochemistry 84/4 865-868 (2019) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] Ikegaya R, Shintani M, Kimbara K, Fukuda M, Yoshida N. [DOI] [27]. Cloning, expression and characterization of catechol 1,2-dioxygenase from Burkholderia cepacia. The Journal of General Applied Microbiology in press/ - (2019) [Refereed] refereed [Internationally co-authored papers] internationally co-authored paper [Lead author or co-author] co-author [Author] Ngoc Thi TV, Hoang Sinh DD, Ha Thanh LT, Huy ND, Tue NH, Shintani M, Kimbara K, Loc NH. [DOI] [28]. Algoriphagus sanaruensis sp. nov., a member of the family Cyclobacteriaceae, isolated from a brackish lake in Hamamatsu, Japan International Journal of Systematic and Evolutionary Microbiology 69/7 2108-2113 (2019) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] author [Author] Yoshiaki Maejima, Takao Iino, Yusuke Muraguchi, Moriya Ohkuma, Kazuhide Kimbara, Masaki Shintani [URL] [29]. Isolation and characterization of a moderate thermophilic Paenibacillus naphthalenovorans strain 4B1 capable of degrading dibenzofuran from dioxin-contaminated soil in Vietnam. Journal of Bioscience and Bioengineering / - (2019) [Refereed] refereed [Internationally co-authored papers] internationally co-authored paper [Lead author or co-author] co-author [Author] Thanh LTH, Thi TVN, Shintani M, Moriuchi R, Dohra H, Loc NH, Kimbara K. [DOI] [30]. High-resolution comparison of bacterial conjugation frequencies Journal of Visualized Experiments 143/ e57812- (2019) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] author [Author] Masaki Shintani$Moriya Ohkuma$Kazuhide Kimbara [DOI] [31]. Reconsidering plasmid maintenance factors for computational plasmid design Computational and Structural Biotechnology Journal 17/ 70-81 (2018) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] Hirokazu Yano$Masaki Shintani$Masaru Tomita$Haruo Suzuki$Taku Oshima [DOI] [32]. Novel self-transmissible and broad-host-range plasmids exogenously captured from anaerobic granules or cow manure. Frontiers in Microbiology 9/ 2602- (2018) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] author [Author] 柳谷洸輔＄前島由明＄仲田裕樹＄德田真穂＄森内良太＄道羅英夫＄井上謙吾＄大熊盛也＄金原和秀＄新谷政己 [DOI] [33]. Biodegradation of A-fuel oil in soil samples with bacterial mixtures of Rhodococcus and Gordonia strains under low temperature conditions. Journal of Bioscience and Bioengineering 127/2 197-200 (2018) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] Shintani M, Sugiyama K, Sakurai T, Yamada K, Kimbara K. [DOI] [34]. Proteobacteria and Bacteroidetes are major phyla of filterable bacteria passing through 0.22 μm pore size membrane filter, in Lake Sanaru, Hamamatsu, Japan Bioscience, Biotechnology, and Biochemistry 82/7 1260-1263 (2018) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] author [Author] [責任著者]新谷政己 [共著者]前島由明$久志本晃弥$村口雄亮$福田洸平$三浦隆匡$山副敦司$金原和秀 [DOI] [35]. Divalent cations increase the conjugation efficiency of the incompatibility P-7 group plasmid pCAR1 among different Pseudomonas hosts Microbiology 164/1 20-27 (2018) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] author [Author] [責任著者]新谷政己,野尻秀昭 [共著者]作田郁子$鈴木（水口）千穂$松井一泰$高橋裕里香$岡田憲典$山根久和$新谷政己$野尻秀昭 [DOI] [36]. 96/1 25-25 (2018) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] author [Author] 新谷政己 [37]. Lanthanide-Dependent Regulation of Methylotrophy in Methylobacteriumaquaticum Strain 22A mSphere 3/1 pii: e00462-17- (zzz) (2018) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] [責任著者]谷明生 [共著者]Masuda S$Suzuki Y$, Fujitani Y$Mitsui R$Nakagawa T$新谷政己 [DOI] [38]. Different transferability of incompatibility (Inc) P-7 plasmid pCAR1 and IncP-1 plasmid pBP136 in stirring liquid conditions PLoS One 12/10 e0186248- (2017) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] author [Author] [責任著者]新谷政己 [共著者]中澤駿介$孕石明$福田洸平$金山幸恵$渡邊俊昇$雪真弘$大熊盛也$武田和宏$金原和秀$新谷政己 [DOI] [39]. Synergistic degradation of pyrene by five culturable bacteria in a mangrove sediment-derived bacterial consortium. Journal of Hazardous Materials 342/(num) 561-570 (2017) [Refereed] refereed [Internationally co-authored papers] internationally co-authored paper [Lead author or co-author] co-author [Author] [責任著者]野尻秀昭$Pinyakong Onruthai [共著者]Wanapaisan P$Laothamteep N$Vejarano F$Chakraborty J$新谷政己$Muangchinda C$Morita T$Suzuki-Minakuchi C$Inoue K [DOI] [40]. Interaction of bacterial membrane vesicles with specific species and their potential for delivery to target cells. Frontiers in Microbiology 8/571 - (2017) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] [責任著者]田代陽介 [共著者]田代陽介$長谷川雄将$新谷政己$髙木航太郎$大熊盛也$金原和秀$二又裕之 [Notes] オンラインジャーナル [DOI] [41]. The behavior of mobile genetic elements (MGEs) in different environments. Bioscience, Biotechnology, and Biochemistry in press/ - (2017) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] author [Author] 新谷政己 [DOI] [42]. 74/3 212-216 (2016) [Refereed] non-refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] author [Author] 新谷政己 [43]. Complete genome sequence of Algoriphagus sp. strain M8-2, isolated from a brackish lake. Genome Announcement 4/3 pii:e00347-16（オンライン雑誌）- (2016) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] author [Author] [責任著者]新谷政己 [共著者]村口雄亮$久志本晃弥$大坪嘉行$鈴木智大$道羅道夫$金原和秀$新谷政己 [DOI] [44]. MvaT family proteins encoded on IncP-7 plasmid pCAR1 and the host chromosome regulate host transcriptome cooperatively but differently. Applied and Environmental Microbiology 82/3 832-842 (2016) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] [責任著者]野尻秀昭 [共著者]尹忠誅$高橋裕里香$新谷政己$武田俊春$水口（鈴木）千穂$岡田憲典$山根久和$野尻秀昭 [URL] [DOI] [45]. Comparisons of the transferability of plasmids pCAR1, pB10, R388, and NAH7 among Pseudomonas putida at different cell densities. Bioscience, Biotechnology, and Biochemistry 80/5 1020-1023 (2016) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] [責任著者]野尻秀昭 [共著者]柳田洸輔$作田郁子$水口（鈴木）千穂$新谷政己$松井一泰$岡田憲典$山根久和$野尻秀昭 [DOI] [46]. Dominant ectosymbiotic bacteria of cellulolytic protists also degrade lignocellulose in the termite gut. Environmental Microbiology 17/12 4942-4953 (2015) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] [責任著者]大熊盛也 [共著者]雪真弘$桑原宏和$新谷政己$伊澤和輝$佐藤朋之$Sarns, David$本郷裕一 [47]. Effects of phosphate addition on methane fermentation in the batch and upflow anaerobic sludge blanket (UASB) reactors. Applied Microbiology and Biotechnology 99/24 10457-10466 (2015) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] [責任著者]金原和秀 [共著者]鈴木翔$新谷政己$ゾイサンチェス$木村光平$沼田充$山副敦司 [Notes] 全て [URL] [DOI] [48]. Nucleoid-associated proteins encoded on plasmids: Occurrence and mode of function. Plasmid 80/ 32-44 (2015) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] [責任著者]野尻秀昭 [共著者]新谷政己$水口（鈴木）千穂 [URL] [DOI] [49]. Effects of three different nucleoid-associated proteins encoded on the IncP-7 plasmid pCAR1 on the host Pseudomonas putida KT2440. Applied and Environmental Microbiology 81/8 2869-2880 (2015) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] [責任著者]野尻秀昭 [共著者]水口（鈴木）千穂$廣谷龍輔$新谷政己$武田俊春$高橋裕里香$松井一泰$Vesiliva D$尹忠誅$岡田憲典$山根久和$野尻秀昭 [URL] [50]. Genomics of microbial plasmids: classification and identification based on replication and transfer systems and host taxonomy Frontiers in Microbiology 31/6/242 - (2015) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] author [Author] [責任著者]新谷政己 [共著者]Sanchez, Zoe$金原和秀 [Notes] オンラインジャーナル [DOI] [51]. Genomics of plasmids Journal of Environmental Biotechnology 14/2 1-6 (2015) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] author [Author] [責任著者]新谷政己 [共著者]新谷政己,金原和秀 [52]. Modulation of primary cell function of host Pseudomonas bacteria by the conjugative plasmid pCAR1. Environmental Microbiology 17/(1)/ 134-155 (2015) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] [責任著者]野尻秀昭 [共著者]高橋裕里香,新谷政己,高瀬識之,加増由佳,河村富士夫,原啓文,西田洋巳,岡田憲典,山根久和,野尻秀昭 [Notes] 高橋裕里香と新谷政己の本論文に対する貢献度は同等である．（co-first author） [DOI] [53]. 92/6 287-290 (2014) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] [責任著者]加藤純一 [共著者]加藤純一,金原和秀,佐々木健,中村雅哉,中島田豊,平井浩文,大塚祐一郎,新谷政己 [54]. Complete genome sequence of polychlorinated biphenyl degrader Comamonas testosteroni TK102 (NBRC 109938) Genome Announcement 2/5 doi:10.1128/genomeA.00865-14.- (2014) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] [責任著者]金原和秀 [共著者]福田洸平,細山哲,土金恵子,黄地祥子,山副敦司,藤田信之,新谷政己 [55]. Single-cell analyses revealed transfer ranges of IncP-1, IncP-7, and IncP-9 plasmids in a soil bacterial community. Applied and Environmental Microbiology 80/1 138-145 (2014) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] author [Author] [責任著者]新谷政己 [共著者]松井一泰,井上潤一,細山哲,金原和秀,大熊盛也 [URL] [56]. Complete genome sequence of the thermophilic polychlorinated biphenyl degrader Geobacillus sp. strain JF8 (NBRC 109937) Genome Announcement 1/2 e01213-13. - (2014) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] [責任著者]金原和秀 [共著者]新谷政己,大坪嘉行,福田洸平,細山哲,黄地祥子,山副敦司,藤田信之,永田裕二,津田雅孝,八田貴 [URL] [57]. Complete genome sequence of the carbazole degrader Pseudomonas resinovorans strain CA10 (NBRC 106553) Genome Announcement 1/4 e00488-13- (2013) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] [責任著者]野尻秀昭 [共著者]Shintani M, Hosoyama A, Ohji S, Tsuchikane K, Takarada H, Yamazoe A, Fujita N, Nojiri H. [URL] [58]. 異なる栄養条件下におけるプラスミドの接合伝達頻度の比較解析 12/2 163-167 (2012) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] [責任著者]野尻秀昭 [共著者]新谷政己，李美英，松井一泰，大熊盛也，岡田憲典，野尻秀昭 [59]. ParI, an orphan ParA family protein from Pseudomonas putida KT2440-specific genomic island, interferes with the partition system of IncP-7 plasmids. Environmental Microbiology 14/11 2946-2959 (2012) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] [責任著者]Miyakoshi M [共著者]Miyakoshi M, Shintani M, Inoue K, Terabayashi T, Sai F, Ohkuma M, Nojiri H, Nagata Y, Tsuda M [60]. DNA rearrangement occurred in the carbazole degradative plasmid pCAR1 and the chromosome of its unsuitable host Pseudomonas fluorescens Pf0-1. Microbiology 157/12 3405-3416 (2011) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] [責任著者]Nojiri H. [共著者]Shintani M, Matsumoto T, Yoshikawa H, Yamane H, Ohkuma M, Nojiri H [61]. Evolution of the IncP-7 carbazole-degradative plasmid pCAR1 improves survival of its host Pseudomonas fluorescens Pf0-1 in artificial water microcosms. Microbiology 157(8)/ 2276-2286 (2011) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] [責任著者]Nojiri H. [共著者]Shintani M, Horisaki T, Yamane H, Ohkuma M, Nojiri H [62]. Alterations of RNA maps of IncP-7 plasmid pCAR1 in various Pseudomonas bacteria. Plasmid 66(2)/ 85-92 (2011) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] [責任著者]Nojiri H. [共著者]Shintani M, Tokumaru H, Takahashi Y, Miyakoshi M, Yamane H, Nishida H, Nojiri H [63]. Distribution of genes encoding nucleoid-associated protein homologs in plasmids. International Journal of Evolutionary Biology 2011 685015 (2011) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] [責任著者]Nojiri H. [共著者]Takeda T, Yun CS, Shintani M, Yamane H, Nojiri H [64]. Pmr, a histone-like protein H1 (H-NS) family protein encoded by the IncP-7 plasmid pCAR1, is a key global regulator that alters host function. Journal of Bacteriology 192/18 4720-4731 (2010) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] [責任著者]Nojiri H. [共著者]Yun CS, Suzuki C, Naito K, Takeda T, Takahashi Y, Sai F, Terabayashi T, Miyakoshi M, Shintani M, Nishida H, Yamane H, Nojiri H. [65]. Behavior of various hosts of the IncP-7 carbazole-degradative plasmid pCAR1 in artificial microcosms. Bioscience, Biotechnology, and Biochemistry 74/2 343-349 (2010) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] [責任著者]Nojiri H. [共著者]Shintani M, Yamane H, Nojiri H. [66]. Response of the Pseudomonas host chromosomal transcriptome to carriage of the IncP-7 plasmid pCAR1. Environmental Microbiology 12/6 1413-1426 (2010) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] [責任著者]Nojiri H. [共著者]Shintani M, Takahashi Y, Tokumaru H, Kadota K, Hara H, Miyakoshi M, Naito K, Yamane H, Nishida H, Nojiri H [67]. Carbazole-degradative IncP-7 plasmid pCAR1.2 is structurally unstable in Pseudomonas fluorescens Pf0-1, which accumulates catechol, the intermediate of the carbazole degradation pathway. Applied and Environmental Microbiology 75/12 485-497 (2009) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] [責任著者]Nojiri H. [共著者]Takahashi Y, Shintani M, Li L, Yamane H, Nojiri H. [68]. The complete nucleotide sequence of pCAR2: pCAR2 and pCAR1 were structurally identical IncP-7 carbazole degradative plasmids. Bioscience, Biotechnology, and Biochemistry 73/3 744-746 (2009) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] [責任著者]Nojiri H. [共著者]Takahashi Y, Shintani M, Yamane H, Nojiri H. [69]. Behavior of the IncP-7 carbazole-degradative plasmid pCAR1 in artificial environmental samples Applied Microbiology and Biotechnology 80/3 485-497 (2008) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper [Lead author or co-author] co-author [Author] [責任著者]Nojiri H. [共著者]Shintani M, Matsui K, Takemura T, Yamane H, Nojiri H.

[1]. Incompatibility groups of Pseudomonas plasmids revisited: comprehensive analysis of R factors and their replicon
BioRxiv / - 7660435 (2024) [Refereed] non-refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] Yosuke Nishimura, Kensei Kaneko, Tatsuya Kamijo, Nanako Isogai, Maho Tokuda, Hui Xie, Yusuke Tsuda, Aki Hirabayashi, Ryota Moriuchi, Hideo Dohra, Kazuhide Kimbara, Chiho Suzuki-Minakuchi, Hideaki Nojiri, Haruo Suzuki, Masato Suzuki, Masaki Shintan [DOI]
[2]. Harnessing a T1 Phage-Derived Spanin for Developing Phage-Based Antimicrobial Development
BioDesign Research 6/0028 - (2024) [Refereed] non-refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Yamashita W, Ojima S, Tamura A, Azam AH, Kondo K, Yuancheng Z, Cui L, Shintani M, Suzuki M, Takahashi Y, Watashi K, Tsuneda S, Kiga K. [DOI]
[3]. Chromosome-scale genome assembly of an acidophilic microalga Tetratostichococcus sp. P1 isolated from a tropical peatland in Malaysia
Microbiology Resource Announcements in press/ - (2024) [Refereed] refereed [Internationally co-authored papers] internationally co-authored paper
[Lead author or co-author] co-author
[Author] Maeda Y, Hirakawa T, Suzuki S, Suhaimi N, Syahirah N, Anuar S, Yoneda K, Shintani M, Suzuki K, Sunagawa N, Kawachi M, Suzuki I, Hara H [DOI]
[4]. Microbial evolution through horizontal gene transfer by mobile genetic elements
Microbial Biotechnology in press/ - (2024) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] Maho Tokuda, Masaki Shintani [DOI]
[5]. Identification of genes involved in enhanced membrane vesicle formation in Pseudomonas aeruginosa biofilms: Surface sensing facilitates vesiculation
Frontiers in Microbiology 14/ - 1252155. (2023) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Kanno M, Shiota T, Ueno S, Takahara M, Haneda K, Tahara YO, Shintani M, Nakao R, Miyata M, Kimbara K, Futamata H, Tashiro Y [DOI]
[6]. Integrons, transposons and IS elements promote diversification of multidrug resistance plasmids and adaptation of their hosts to antibiotic pollutants from pharmaceutical companies
Environmental Microbiology in press/ - (2023) [Refereed] refereed [Internationally co-authored papers] internationally co-authored paper
[Lead author or co-author] co-author
[Author] Shintani M, Vestergaard G, Milaković M, Kublik S, Smalla K, Schloter M, Udiković-Kolić N [DOI]
[7]. Transconjugant range of PromA plasmids in microbial communities is predicted by sequence similarity with the bacterial host chromosome
Microbial Genomics 9/6 - mgen001043 (2023) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] Tokuda M, Yuki M, Ohkuma M, Kimbara K, Suzuki H, Shintani M. [DOI]
[8]. Isolation and Genomic Analysis of 3-Chlorobenzoate-Degrading Bacteria from Soil
Microorganisms 11/7 - 1684 (2023) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] Ara I, Moriuchi R, Dohra H, Kimbara K, Ogawa N, Shintani M. [DOI]
[9]. Reconsideration of the previously classified incompatibility groups of plasmids, IncP-1 and IncP-11
Environmental Microbiology in press/ - (2023) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] Shintani M, Suzuki H, Nojiri H, Suzuki M. [DOI]
[10]. Plasmids harboring a tandem duplicate of blaVIM-24 in carbapenem-resistant ST1816 Pseudomonas aeruginosa in Japan
Microbial Drug Resistance in press/ - doi: 10.1089/mdr.2022.0168 (2022) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Tomomi Hishinuma, Tatsuya Tada, Mari Tohya, Masaki Shintani, Masato Suzuki, Masahiro Shimojima, Teruo Kirikae [DOI]
[11]. Complete genome sequence of Rhodococcus qingshengii N9T-4.
Microbiology Resource Announcements 8/ - e0089122 (2022) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] Obi N, Moriuchi R, Dohra H, Kimbara K, Shintani M, Yoshida N. [DOI]
[12]. Hitherto-unnoticed self-transmissible plasmids widely distributed among different environments in Japan
Applied and Environmental Microbiology 88/ - e0111422 (2022) [Refereed] non-refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] Masaya Hayakawa, Maho Tokuda, Kensei Kaneko, Koichiro Nakamichi, Yukie Yamamoto, Tatsuya Kamijo, Honoka Umeki, Reimi Chiba, Ryo Yamada, Mitsuya Mori, Kosuke Yanagiya, Ryota Moriuchi, Masahiro Yuki, Hideo Dohra, Hiroyuki Futamata, Moriya Ohkuma, Kazuhide Kimbara, Masaki Shintani [DOI]
[13]. Oligotrophic gene expression in Rhodococcus erythropolis N9T-4 under various nutrient conditions
Microorganisms 10/9 - 1725 (2022) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Yuri Ikeda, Mana Kishimoto, Masaki Shintani, Nobuyuki Yoshida [DOI]
[14]. Precise classification of antimicrobial resistance-associated IncP-2 megaplasmids for molecular epidemiological studies on Pseudomonas species
Journal of Antimicrobial Chemotherapy in press/ - (2022) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] Shintani M, Suzuki H, Nojiri H, Suzuki M. [URL] [DOI]
[15]. Incorporation of plasmid DNA in to bacterial membrane vesicles by peptidoglycan defects in Escherichia coli
Frontiers in Microbiology 12/ - 747606 (2021) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Aktar S, Okamoto Y, Ueno S, Tahara YO, Imaizumi M, Shintani M, Miyata M, Futamata H, Nojiri H, Tashiro Y. [DOI]
[16]. Fluviispira sanaruensis sp., nov., isolated from a brackish lake in Hamamatsu, Japan
Current Microbiology 78/8 3268-3276 (2021) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] Maejima Y, Iino T, Moriuchi R, Muraguchi Y, Fukuda K, Nojiri H, Ohkuma M, Dohra H, Kimbara K, Shintani M [URL] [DOI]
[17]. Effects of environmental factors and coexisting substrates on PAH degradation and transcriptomic responses of the defined bacterial consortium OPK.
Environmental Pollution 277/ 116769- (2021) [Refereed] refereed [Internationally co-authored papers] internationally co-authored paper
[Lead author or co-author] co-author
[Author] Laothamteep N, Kawano H, Vejarano F, Suzuki-Minakuchi C, Shintani M, Nojiri H, Pinyakong O. [DOI]
[18]. Oxygen concentration affects frequency and range of transconjugants for the incompatibility (Inc) P-1 and P-7 plasmids pBP136 and pCAR1.
Bioscience, Biotechnology, Biochemistry 85/4 1005-1015 (2020) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] Ochi K, Tokuda M, Yanagiya K, Suzuki-Minakuchi C, Nojiri H, Yuki M, Ohkuma M, Kimbara K, Shintani M. [URL] [DOI]
[19]. Plant species-dependent increased abundance and diversity of IncP-1 plasmids in the rhizosphere -new insights into their role and ecology
Frontiers in Microbiology 11/ 590776- (2020) [Refereed] refereed [Internationally co-authored papers] internationally co-authored paper
[Lead author or co-author] co-author
[Author] Shintani M, Nour E, Elsayed T, Blau K, Wall I, Jechalke S, Spröer C, Bunk B, Overmann J, Smalla K [URL] [DOI]
[20]. Multilamellar and multivesicular outer membrane vesicles produced by a Buttiauxella agrestis tolB mutant.
Applied and Environmental Microbiology / - (2020) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] KotaroTakaki, Yuhei Tahara, Nao Nakamichi, Yusuke Hasegawa, Masaki Shintani, Moriya Ohkuma, Makoto Miyata, Hiroyuki Futamata, Yosuke Tashiro [DOI]
[21]. Light-response of Pseudomonas putida KT2440 mediated by class II LitR, a photosensor homolog.
Journal of Bacteriology / - (2020) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Satoru Sumi, Naotaka Mutaguchi, Teppei Ebuchi, Hiroaki Tsuchida, Takahiro Yamamoto, Maki Suzuki, Chihiro Natsuka, Hatsumi Shiratori-Takano, Masaki Shintani, Hideaki Nojiri, Kenji Ueda, Hideaki Takano [DOI]
[22]. Determination of plasmid pSN1216-29 host range and the similarity in oligonucleotide composition between plasmid and host chromosomes.
Frontiers in Microbiology 11/ 1187- (2020) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] Maho Tokuda, Haruo Suzuki, Kosuke Yanagiya, Masahiro Yuki, Kengo Inoue, Moriya Ohkuma, Kazuhide Kimbara, Masaki Shintani [URL] [DOI]
[23]. Chryseotalea sanaruensis gen. nov., sp., nov., a Member of the Family Cytophagaceae, Isolated from a Brackish Lake in Hamamatsu Japan.
Current Microbiology 77/2 306-312 (2020) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] Maejima Y, Iino T, Muraguchi Y, Fukuda K, Ohkuma M, Suzuki T, Moriuchi R, Dohra H, Kimbara K, Shintani M. [DOI]
[24]. A rotational slurry bioreactor accelerates biodegradation of A-fuel in oil-contaminated soil even under low temperature conditions.
Microorganisms 8/2 E291- (2020) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] Miyoshi Y, Okada J, Urata T, Shintani M, Kimbara K. [URL] [DOI]
[25]. Isolation and Characterization of Genes Responsible for Naphthalene Degradation from Thermophilic Naphthalene Degrader, Geobacillus sp. JF8.
Microorganisms 8/1 E44- (2019) [Refereed] refereed [Internationally co-authored papers] internationally co-authored paper
[Lead author or co-author] author
[Author] Miyazawa D, Thanh LTH, Tani A, Shintani M, Loc NH, Hatta T, Kimbara K. [URL] [DOI]
[26]. Identification of a transcriptional regulator for oligotrophy-responsive promoter in Rhodococcus erythropolis N9T-4.
Bioscience, Biotechnology, and Biochemistry 84/4 865-868 (2019) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Ikegaya R, Shintani M, Kimbara K, Fukuda M, Yoshida N. [DOI]
[27]. Cloning, expression and characterization of catechol 1,2-dioxygenase from Burkholderia cepacia.
The Journal of General Applied Microbiology in press/ - (2019) [Refereed] refereed [Internationally co-authored papers] internationally co-authored paper
[Lead author or co-author] co-author
[Author] Ngoc Thi TV, Hoang Sinh DD, Ha Thanh LT, Huy ND, Tue NH, Shintani M, Kimbara K, Loc NH. [DOI]
[28]. Algoriphagus sanaruensis sp. nov., a member of the family Cyclobacteriaceae, isolated from a brackish lake in Hamamatsu, Japan
International Journal of Systematic and Evolutionary Microbiology 69/7 2108-2113 (2019) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] Yoshiaki Maejima, Takao Iino, Yusuke Muraguchi, Moriya Ohkuma, Kazuhide Kimbara, Masaki Shintani [URL]
[29]. Isolation and characterization of a moderate thermophilic Paenibacillus naphthalenovorans strain 4B1 capable of degrading dibenzofuran from dioxin-contaminated soil in Vietnam.
Journal of Bioscience and Bioengineering / - (2019) [Refereed] refereed [Internationally co-authored papers] internationally co-authored paper
[Lead author or co-author] co-author
[Author] Thanh LTH, Thi TVN, Shintani M, Moriuchi R, Dohra H, Loc NH, Kimbara K. [DOI]
[30]. High-resolution comparison of bacterial conjugation frequencies
Journal of Visualized Experiments 143/ e57812- (2019) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] Masaki Shintani$Moriya Ohkuma$Kazuhide Kimbara [DOI]
[31]. Reconsidering plasmid maintenance factors for computational plasmid design
Computational and Structural Biotechnology Journal 17/ 70-81 (2018) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Hirokazu Yano$Masaki Shintani$Masaru Tomita$Haruo Suzuki$Taku Oshima [DOI]
[32]. Novel self-transmissible and broad-host-range plasmids exogenously captured from anaerobic granules or cow manure.
Frontiers in Microbiology 9/ 2602- (2018) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] 柳谷洸輔＄前島由明＄仲田裕樹＄德田真穂＄森内良太＄道羅英夫＄井上謙吾＄大熊盛也＄金原和秀＄新谷政己 [DOI]
[33]. Biodegradation of A-fuel oil in soil samples with bacterial mixtures of Rhodococcus and Gordonia strains under low temperature conditions.
Journal of Bioscience and Bioengineering 127/2 197-200 (2018) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] Shintani M, Sugiyama K, Sakurai T, Yamada K, Kimbara K. [DOI]
[34]. Proteobacteria and Bacteroidetes are major phyla of filterable bacteria passing through 0.22 μm pore size membrane filter, in Lake Sanaru, Hamamatsu, Japan
Bioscience, Biotechnology, and Biochemistry 82/7 1260-1263 (2018) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] [責任著者]新谷政己 [共著者]前島由明$久志本晃弥$村口雄亮$福田洸平$三浦隆匡$山副敦司$金原和秀 [DOI]
[35]. Divalent cations increase the conjugation efficiency of the incompatibility P-7 group plasmid pCAR1 among different Pseudomonas hosts
Microbiology 164/1 20-27 (2018) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] [責任著者]新谷政己,野尻秀昭 [共著者]作田郁子$鈴木（水口）千穂$松井一泰$高橋裕里香$岡田憲典$山根久和$新谷政己$野尻秀昭 [DOI]
[36].
96/1 25-25 (2018) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] 新谷政己
[37]. Lanthanide-Dependent Regulation of Methylotrophy in Methylobacteriumaquaticum Strain 22A
mSphere 3/1 pii: e00462-17- (zzz) (2018) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]谷明生 [共著者]Masuda S$Suzuki Y$, Fujitani Y$Mitsui R$Nakagawa T$新谷政己 [DOI]
[38]. Different transferability of incompatibility (Inc) P-7 plasmid pCAR1 and IncP-1 plasmid pBP136 in stirring liquid conditions
PLoS One 12/10 e0186248- (2017) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] [責任著者]新谷政己 [共著者]中澤駿介$孕石明$福田洸平$金山幸恵$渡邊俊昇$雪真弘$大熊盛也$武田和宏$金原和秀$新谷政己 [DOI]
[39]. Synergistic degradation of pyrene by five culturable bacteria in a mangrove sediment-derived bacterial consortium.
Journal of Hazardous Materials 342/(num) 561-570 (2017) [Refereed] refereed [Internationally co-authored papers] internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]野尻秀昭$Pinyakong Onruthai [共著者]Wanapaisan P$Laothamteep N$Vejarano F$Chakraborty J$新谷政己$Muangchinda C$Morita T$Suzuki-Minakuchi C$Inoue K [DOI]
[40]. Interaction of bacterial membrane vesicles with specific species and their potential for delivery to target cells.
Frontiers in Microbiology 8/571 - (2017) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]田代陽介 [共著者]田代陽介$長谷川雄将$新谷政己$髙木航太郎$大熊盛也$金原和秀$二又裕之 [Notes] オンラインジャーナル
[DOI]
[41]. The behavior of mobile genetic elements (MGEs) in different environments.
Bioscience, Biotechnology, and Biochemistry in press/ - (2017) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] 新谷政己 [DOI]
[42].
74/3 212-216 (2016) [Refereed] non-refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] 新谷政己
[43]. Complete genome sequence of Algoriphagus sp. strain M8-2, isolated from a brackish lake.
Genome Announcement 4/3 pii:e00347-16（オンライン雑誌）- (2016) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] [責任著者]新谷政己 [共著者]村口雄亮$久志本晃弥$大坪嘉行$鈴木智大$道羅道夫$金原和秀$新谷政己 [DOI]
[44]. MvaT family proteins encoded on IncP-7 plasmid pCAR1 and the host chromosome regulate host transcriptome cooperatively but differently.
Applied and Environmental Microbiology 82/3 832-842 (2016) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]野尻秀昭 [共著者]尹忠誅$高橋裕里香$新谷政己$武田俊春$水口（鈴木）千穂$岡田憲典$山根久和$野尻秀昭 [URL] [DOI]
[45]. Comparisons of the transferability of plasmids pCAR1, pB10, R388, and NAH7 among Pseudomonas putida at different cell densities.
Bioscience, Biotechnology, and Biochemistry 80/5 1020-1023 (2016) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]野尻秀昭 [共著者]柳田洸輔$作田郁子$水口（鈴木）千穂$新谷政己$松井一泰$岡田憲典$山根久和$野尻秀昭 [DOI]
[46]. Dominant ectosymbiotic bacteria of cellulolytic protists also degrade lignocellulose in the termite gut.
Environmental Microbiology 17/12 4942-4953 (2015) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]大熊盛也 [共著者]雪真弘$桑原宏和$新谷政己$伊澤和輝$佐藤朋之$Sarns, David$本郷裕一
[47]. Effects of phosphate addition on methane fermentation in the batch and upflow anaerobic sludge blanket (UASB) reactors.
Applied Microbiology and Biotechnology 99/24 10457-10466 (2015) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]金原和秀 [共著者]鈴木翔$新谷政己$ゾイサンチェス$木村光平$沼田充$山副敦司 [Notes] 全て
[URL] [DOI]
[48]. Nucleoid-associated proteins encoded on plasmids: Occurrence and mode of function.
Plasmid 80/ 32-44 (2015) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]野尻秀昭 [共著者]新谷政己$水口（鈴木）千穂 [URL] [DOI]
[49]. Effects of three different nucleoid-associated proteins encoded on the IncP-7 plasmid pCAR1 on the host Pseudomonas putida KT2440.
Applied and Environmental Microbiology 81/8 2869-2880 (2015) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]野尻秀昭 [共著者]水口（鈴木）千穂$廣谷龍輔$新谷政己$武田俊春$高橋裕里香$松井一泰$Vesiliva D$尹忠誅$岡田憲典$山根久和$野尻秀昭 [URL]
[50]. Genomics of microbial plasmids: classification and identification based on replication and transfer systems and host taxonomy
Frontiers in Microbiology 31/6/242 - (2015) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] [責任著者]新谷政己 [共著者]Sanchez, Zoe$金原和秀 [Notes] オンラインジャーナル
[DOI]
[51]. Genomics of plasmids
Journal of Environmental Biotechnology 14/2 1-6 (2015) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] [責任著者]新谷政己 [共著者]新谷政己,金原和秀
[52]. Modulation of primary cell function of host Pseudomonas bacteria by the conjugative plasmid pCAR1.
Environmental Microbiology 17/(1)/ 134-155 (2015) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]野尻秀昭 [共著者]高橋裕里香,新谷政己,高瀬識之,加増由佳,河村富士夫,原啓文,西田洋巳,岡田憲典,山根久和,野尻秀昭 [Notes] 高橋裕里香と新谷政己の本論文に対する貢献度は同等である．（co-first author）
[DOI]
[53].
92/6 287-290 (2014) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]加藤純一 [共著者]加藤純一,金原和秀,佐々木健,中村雅哉,中島田豊,平井浩文,大塚祐一郎,新谷政己
[54]. Complete genome sequence of polychlorinated biphenyl degrader Comamonas testosteroni TK102 (NBRC 109938)
Genome Announcement 2/5 doi:10.1128/genomeA.00865-14.- (2014) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]金原和秀 [共著者]福田洸平,細山哲,土金恵子,黄地祥子,山副敦司,藤田信之,新谷政己
[55]. Single-cell analyses revealed transfer ranges of IncP-1, IncP-7, and IncP-9 plasmids in a soil bacterial community.
Applied and Environmental Microbiology 80/1 138-145 (2014) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] [責任著者]新谷政己 [共著者]松井一泰,井上潤一,細山哲,金原和秀,大熊盛也 [URL]
[56]. Complete genome sequence of the thermophilic polychlorinated biphenyl degrader Geobacillus sp. strain JF8 (NBRC 109937)
Genome Announcement 1/2 e01213-13. - (2014) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]金原和秀 [共著者]新谷政己,大坪嘉行,福田洸平,細山哲,黄地祥子,山副敦司,藤田信之,永田裕二,津田雅孝,八田貴 [URL]
[57]. Complete genome sequence of the carbazole degrader Pseudomonas resinovorans strain CA10 (NBRC 106553)
Genome Announcement 1/4 e00488-13- (2013) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]野尻秀昭 [共著者]Shintani M, Hosoyama A, Ohji S, Tsuchikane K, Takarada H, Yamazoe A, Fujita N, Nojiri H. [URL]
[58]. 異なる栄養条件下におけるプラスミドの接合伝達頻度の比較解析
12/2 163-167 (2012) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]野尻秀昭 [共著者]新谷政己，李美英，松井一泰，大熊盛也，岡田憲典，野尻秀昭
[59]. ParI, an orphan ParA family protein from Pseudomonas putida KT2440-specific genomic island, interferes with the partition system of IncP-7 plasmids.
Environmental Microbiology 14/11 2946-2959 (2012) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Miyakoshi M [共著者]Miyakoshi M, Shintani M, Inoue K, Terabayashi T, Sai F, Ohkuma M, Nojiri H, Nagata Y, Tsuda M
[60]. DNA rearrangement occurred in the carbazole degradative plasmid pCAR1 and the chromosome of its unsuitable host Pseudomonas fluorescens Pf0-1.
Microbiology 157/12 3405-3416 (2011) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Nojiri H. [共著者]Shintani M, Matsumoto T, Yoshikawa H, Yamane H, Ohkuma M, Nojiri H
[61]. Evolution of the IncP-7 carbazole-degradative plasmid pCAR1 improves survival of its host Pseudomonas fluorescens Pf0-1 in artificial water microcosms.
Microbiology 157(8)/ 2276-2286 (2011) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Nojiri H. [共著者]Shintani M, Horisaki T, Yamane H, Ohkuma M, Nojiri H
[62]. Alterations of RNA maps of IncP-7 plasmid pCAR1 in various Pseudomonas bacteria.
Plasmid 66(2)/ 85-92 (2011) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Nojiri H. [共著者]Shintani M, Tokumaru H, Takahashi Y, Miyakoshi M, Yamane H, Nishida H, Nojiri H
[63]. Distribution of genes encoding nucleoid-associated protein homologs in plasmids.
International Journal of Evolutionary Biology 2011 685015 (2011) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Nojiri H. [共著者]Takeda T, Yun CS, Shintani M, Yamane H, Nojiri H
[64]. Pmr, a histone-like protein H1 (H-NS) family protein encoded by the IncP-7 plasmid pCAR1, is a key global regulator that alters host function.
Journal of Bacteriology 192/18 4720-4731 (2010) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Nojiri H. [共著者]Yun CS, Suzuki C, Naito K, Takeda T, Takahashi Y, Sai F, Terabayashi T, Miyakoshi M, Shintani M, Nishida H, Yamane H, Nojiri H.
[65]. Behavior of various hosts of the IncP-7 carbazole-degradative plasmid pCAR1 in artificial microcosms.
Bioscience, Biotechnology, and Biochemistry 74/2 343-349 (2010) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Nojiri H. [共著者]Shintani M, Yamane H, Nojiri H.
[66]. Response of the Pseudomonas host chromosomal transcriptome to carriage of the IncP-7 plasmid pCAR1.
Environmental Microbiology 12/6 1413-1426 (2010) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Nojiri H. [共著者]Shintani M, Takahashi Y, Tokumaru H, Kadota K, Hara H, Miyakoshi M, Naito K, Yamane H, Nishida H, Nojiri H
[67]. Carbazole-degradative IncP-7 plasmid pCAR1.2 is structurally unstable in Pseudomonas fluorescens Pf0-1, which accumulates catechol, the intermediate of the carbazole degradation pathway.
Applied and Environmental Microbiology 75/12 485-497 (2009) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Nojiri H. [共著者]Takahashi Y, Shintani M, Li L, Yamane H, Nojiri H.
[68]. The complete nucleotide sequence of pCAR2: pCAR2 and pCAR1 were structurally identical IncP-7 carbazole degradative plasmids.
Bioscience, Biotechnology, and Biochemistry 73/3 744-746 (2009) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Nojiri H. [共著者]Takahashi Y, Shintani M, Yamane H, Nojiri H.
[69]. Behavior of the IncP-7 carbazole-degradative plasmid pCAR1 in artificial environmental samples
Applied Microbiology and Biotechnology 80/3 485-497 (2008) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Nojiri H. [共著者]Shintani M, Matsui K, Takemura T, Yamane H, Nojiri H.