[1].
61/6 257-259 (2023) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] 堀池徳祐、渡邊知輝
[2]. OrthoPhy: A program to construct ortholog datasets using taxonomic information
Genome Biology and Evolution 15/3 1-16 (2023) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] Tomoaki Watanabe, Akinori Kure, Tokumasa Horiike [DOI]
[3]. The Evolution of Molybdenum Dependent Nitrogenase in Cyanobacteria.
Biology 10/4 329- (2021) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] Watanabe Tomoaki, Horiike Tokumasa [DOI]
[4].
2020/2 139-150 (2020) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] 伊藤玄,古屋康則,堀池徳祐,向井貴彦
[5].
67/1 41-50 (2020) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] 伊藤 玄, 古屋 康則, 堀池 徳祐, 向井 貴彦 [DOI]
[6]. Chronology of emergence of the genus Leptospira and over-representation of gene families enriched by vitamin B2, B12 biosynthesis, cell adhesion and external encapsulating structure in L. interrogans isolates from asymptomatic dogs
Infection, Genetics and Evolution 73/ 7-12 (2019) [Refereed] refereed [Internationally co-authored papers] internationally co-authored paper
[Lead author or co-author] co-author
[Author] Alongkorn Kurilunga, Chantisa Keeratipusana, Tokumasa Horiike, Prapat Suriyaphol, David J.Hampson, NuveePrapasarakul
[7]. Genome Identifier: A Tool for Phylogenetic Analysis of Microbial Genomes.
IPSJ Transactions on Bioinformatics. 12/ 17-20 (2019) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] Yuki Shimoyama, Tokumasa Horiike [DOI]
[8]. Genetic population structure of the eight‑barbel loach Lefua echigoniain the Ise Bay region, a single paleo‑river basin in central Honshu, Japan
Ichthyological Research NA/NA 1-6 (2019) [Refereed] non-refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Gen Ito, [共著者]Yasunori Koya, Shigeru Kitanishi, Tokumasa Horiike, Takahiko Mukai [DOI]
[9]. Evolutionary Analysis of the Highly Conserved Insect Odorant Coreceptor (Orco) Revealed a Positive Selection Mode
J Insect Sci. 18/6 1-8 (2018) [Refereed] refereed [Internationally co-authored papers] internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Soffan A, [共著者]Subandiyah S, Makino H, Watanabe T, Horiike T [DOI]
[10]. An Introduction to molecular phylogenetic analysis
Reviews in Agricultural Science 4/(num) 36-45 (2016) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] 堀池 徳祐
[11]. Genome Sequence of Pectobacterium carotovorum Phage PPWS1, Isolated from Japanese Horseradish [Eutrema japonicum (Miq.) Koidz] Showing Soft-Rot Symptoms.
Genome Announcement 4/2 - (2016) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Hisae Hirata [共著者]Misako Kashihara,Tokumasa Horiike,Tomohiro Suzuki,Hideo Dohra,Osamu Netsu
[12]. Ortholog-Finder: A Tool for Constructing an Ortholog Data Set.
Genome Biology and Evolution 8/2 446-457 (2016) [Refereed] refereed [Internationally co-authored papers] internationally co-authored paper
[Lead author or co-author] author
[Author] [責任著者]Horiike Tokumasa [共著者]Minai Ryoichi,Miyata Daisuke,Nakamura Yoji,Tateno Yoshio [URL]
[13]. Analysis for molecular evolution of microbe
Soil Microorganisms 67/1 22-25 (2013) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] 堀池 徳祐
[14]. Introduction of Metagenome analysis
Soil Microorganisms 66/1 136-139 (2012) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] 堀池 徳祐
[15]. Biochemical characterization of the Arabidopsis KS-type dehydrin protein, whose gene expression is constitutively abundant rather than stress dependent.
Acta Physiologiae Plantarum 33/6 2103-2116 (2011) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Hara M [共著者]Shinoda Y,Kubo M,Kashima D,Takahashi I,Horiike T [URL]
[16]. HGT-Gen: a tool for generating a phylogenetic tree with horizontal gene transfer.
Bioinformation 7/5 211-213 (2011) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] [責任著者]Horiike T [共著者]Miyata D,Tateno Y,Minai R [URL]
[17]. Molecular phylogenetic analysis using computer (2)
Soil Microorganisms 65/2 136-139 (2011) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] 堀池 徳祐
[18]. Molecular phylogenetic analysis using computer (1)
Soil Microorganisms 65/1 55-60 (2011) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] author
[Author] 堀池 徳祐
[19]. Metal-binding characteristics of the protein which shows the highest histidine content in the Arabidopsis genome.
Plant Biotechnology 27/5 475-480 (2010) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Hara M [共著者]Daiju Kashima,Horiike T,Kuboi T [URL]
[20]. A tripartite paternally methylated region within the Gpr1-Zdbf2 imprinted domain on mouse chromosome 1 identified by meDIP-on-chip.
Nucleic Acids Res 38/15 4929-4945 (2010) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Arima T [共著者]Hiura H,Sugawara A,Ogawa H,John RM,Horiike T [URL]
[21]. Extensive analysis of EST sequences reveals that all cichlid species in Lake Victoria share almost identical transcript sets.
Gene 441/1-2 187-191 (2009) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Okada N [共著者]Kobayashi N,Watanabe M,Horiike T, Kohara Y [URL]
[22]. Phylogenetic construction of 17 bacterial phyla by new method and carefully selected orthologs.
Gene 429/1-2 59-64 (2009) [Refereed] refereed [Internationally co-authored papers] internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Tateno Y [共著者]Horiike T,Miyata D,Hamada K,Saruhashi S,Shinozawa T,Chakraborty S [URL]
[23]. Comprehensive analysis of the origin of eukaryotic genomes.
Genes & Genetic Systems 83/4 285-291 (2008) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Shinozawa T [共著者]Saruhashi S,Hamada K,Miyata D,Horiike T [URL]
[24]. Determination of whole prokaryotic phylogeny by the development of a random extraction method.
Gene 392/1-2 157-163 (2007) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Shinozawa T [共著者]Saruhashi S,Hamada K,Horiike T [URL]
[25].
57/5 358-359 (2006) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] 篠沢隆雄、堀池徳祐、濱田一男
[26]. Extensive analysis of ORF sequences from two different cichlid species in Lake Victoria provides molecular evidence for a recent radiation event of the Victoria species flock: Identity of EST sequences between Haplochromis chilotes and Haplochromis sp. "Redtailsheller".
Gene 343/2 263-269 (2004) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Okada N [共著者]Watanabe M,Kobayashi N,Shin-i T,Horiike T,Tateno Y [URL]
[27]. The origin of eukaryotes is suggested as the symbiosis of pyrococcus into γ-proteobacteria by phylogenetic tree based on gene content.
Journal of Molecular Evolution 59/5 606-619 (2004) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Shinozawa T [共著者]Horiike T,Hamada K,Miyata D [URL]
[28]. Molecular chaperones: proposal of a systematic computer-oriented nomenclature and construction of a centralized database.
In Silico Biology 4/3 311-322 (2004) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Shinozawa T [共著者]Sghaier H, Le Ai TH,Horiike T [URL]
[29]. Presence of isochore structures in reptile genomes suggested by the relationship between GC contents of intron regions and those of coding regions.
Genes & Genetic Systems 78/2 195-198 (2003) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Shinozawa T [共著者]Hamada K,Horiike T,Ota H,Mizuno K [URL]
[30]. Origin of Eukaryotic Cell Nuclei by Symbiosis of Archaea in Bacteria supported by the newly clarified origin of functional genes.
Genes & Genetic Systems 77/5 369-376 (2002) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Shinozawa T [共著者]Horiike T,Hamada K,Kanaya S [URL]
[31]. Changes in body temperature pattern in vertebrates do not influence the codon usages of α-globin genes.
Genes & Genetic Systems 77/3 197-207 (2002) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Shinozawa T [共著者]Hamada K,Horiike T,Kanaya S,Nakamura H,Ota H [URL]
[32]. Origin of eukaryotic cell nuclei by symbiosis of Archaea in Bacteria is revealed by homology-hit analysis.
Nature Cell Biology 3/2 210-214 (2001) [Refereed] refereed [Internationally co-authored papers] non-internationally co-authored paper
[Lead author or co-author] co-author
[Author] [責任著者]Shinozawa T [共著者]Horiike T,Hamada K,Kanaya S [URL] |